hanan alabbadi

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Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications

Single-line data<p>If the effort of data collection is not a limiting factor, the best method is to sequence each diploid individual to a sufficient …

Algorithms

Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters

Abstract<p>Background<p>Time course data from microarrays and high-throughput sequencing experiments require simple, computationally efficient and powerful …

Algorithms

MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment

The workflow of our pipeline<p>The workflow of our pipeline (see Figure 1) is explained below wherein Steps 4 and 5 are our new features.<p>Step 1: Assess …

Data Science

SSP: an interval integer linear programming for de novo transcriptome assembly and isoform discovery of RNA-seq reads.

2013 Nov-Dec;102(5-6):507-14. doi: 10.1016/j.ygeno.2013.10.003. Epub 2013 Oct 23.<p>1Department of Bioinformatics, Institute of Biochemistry and …

Programming

Probabilistic alignment leads to improved accuracy and read coverage for bisulfite sequencing data

We compared <i>GNUMAP-bs</i> with several commonly-used BS alignment methods, namely <i>BSMAP</i> (v2.3) [14], <i>Bismark</i>(v0.7.9) [18], <i>LAST</i> [21], and <i>BRAT-BW</i> [19]. We …

Genetics

SNPhylo: a pipeline to construct a phylogenetic tree from huge SNP data

Phylogenetic tree with soybean SNP data<p>As a demonstration of the use of SNPhylo, we determined a tree (Figure 2A) with published SNP data that …

Algorithms

mrSNP: Software to detect SNP effects on microRNA binding

(a) Pairs captured with the minimum matching criteria<p>SNP<p>miRNA<p>Chr<p>Position<p>Alleles<p>Success<p>Explanation<p>rs8829<p>hsa-miR-101<p>7<p>148504618<p>C<p>A<p>✓<p>Binds one of the …

Scottish National Party

BCRgt: a Bayesian cluster regression-based genotyping algorithm for the samples with copy number alterations

Abstract<p>Background<p>Accurate genotype calling is a pre-requisite of a successful Genome-Wide Association Study (GWAS). Although most genotyping …

Algorithms

10 Money Habits That Will Help You Get Serious About Prosperity

Take your financial life to the next level through actions like seeking new income sources, making debts your priority and separating friendship from business.<p>Opinions expressed by <i>Entrepreneur</i> contributors are their own.<p>The power of habit can be quite interesting. Rather than create 2017 …

Where can I get the best deals on OTC drugs?

Walmart and Target win out over drugstore chains like Rite-Aid, CVS, and Walgreens, as well as supermarkets, on prices for dozens of common, …

How To Become A Leader In Your Workplace

Whether you are the boss of your own company, supervisor of a team or at the bottom rung of the corporate ladder, practicing great leadership is an …

Groundbreaking fertilisation technique could allow gay couples to have babies with each other

A new experiment defies nature and might one day let two males have babies with each other.<p>The shocking new study overthrows the idea that it is only …

Genetics